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- A multi-pronged approach to targeting myeloproliferative neoplasms
- A new paradigm of machine learning-based structural variant detection
- A whole lot of junk or a treasure trove of discovery?
- Advanced imaging interrogation of pathogen induced NETosis
- Analysing the metabolic interactions in brain cancer
- Atopic dermatitis causes and treatments
- Boosting the efficacy of immunotherapy in lung cancer
- Building a cell history recorder using synthetic biology for longitudinal patient monitoring
- Characterisation of malaria parasite proteins exported into infected liver cells
- Deciphering the heterogeneity of the tissue microenvironment by multiplexed 3D imaging
- Defining the mechanisms of thymic involution and regeneration
- Delineating the molecular and cellular origins of liver cancer to identify therapeutic targets
- Developing computational methods for spatial transcriptomics data
- Developing drugs to block malaria transmission
- Developing models for prevention of hereditary ovarian cancer
- Developing statistical frameworks for analysing next generation sequencing data
- Development and mechanism of action of novel antimalarials
- Development of novel RNA sequencing protocols for gene expression analysis
- Discoveries in red blood cell production and function
- Discovering epigenetic silencing mechanisms in female stem cells
- Discovery and targeting of novel regulators of transcription
- Dissecting host cell invasion by the diarrhoeal pathogen Cryptosporidium
- Dissecting mechanisms of cytokine signalling
- Doublecortin-like kinases, drug targets in cancer and neurological disorders
- Epigenetic biomarkers of tuberculosis infection
- Epigenetics – genome wide multiplexed single-cell CUT&Tag assay development
- Exploiting cell death pathways in regulatory T cells for cancer immunotherapy
- Exploiting the cell death pathway to fight Schistosomiasis
- Finding treatments for chromatin disorders of intellectual disability
- Functional epigenomics in human B cells
- How do nutrition interventions and interruption of malaria infection influence development of immunity in sub-Saharan African children?
- Human lung protective immunity to tuberculosis
- Improving therapy in glioblastoma multiforme by activating complimentary programmed cell death pathways
- Innovating novel diagnostic tools for infectious disease control
- Integrative analysis of single cell RNAseq and ATAC-seq data
- Interaction with Toxoplasma parasites and the brain
- Interactions between tumour cells and their microenvironment in non-small cell lung cancer
- Investigation of a novel cell death protein
- Malaria: going bananas for sex
- Mapping spatial variation in gene and transcript expression across tissues
- Mechanisms of Wnt secretion and transport
- Multi-modal computational investigation of single-cell communication in metastatic cancer
- Nanoparticle delivery of antibody mRNA into cells to treat liver diseases
- Naturally acquired immune response to malaria parasites
- Organoid-based discovery of new drug combinations for bowel cancer
- Organoid-based precision medicine approaches for oral cancer
- Removal of tissue contaminations from RNA-seq data
- Reversing antimalarial resistance in human malaria parasites
- Role of glycosylation in malaria parasite infection of liver cells, red blood cells and mosquitoes
- Screening for novel genetic causes of primary immunodeficiency
- Single-cell ATAC CRISPR screening – Illuminate chromatin accessibility changes in genome wide CRISPR screens
- Spatial single-cell CRISPR screening – All in one screen: Where? Who? What?
- Statistical analysis of single-cell multi-omics data
- Structural and functional analysis of epigenetic multi-protein complexes in genome regulation
- Structural basing for Wnt acylation
- Structure, dynamics and impact of extra-chromosomal DNA in cancer
- Targeted deletion of disease-causing T cells
- Targeting cell death pathways in tissue Tregs to treat inflammatory diseases
- The cellular and molecular calculation of life and death in lymphocyte regulation
- The role of hypoxia in cell death and inflammation
- The role of ribosylation in co-ordinating cell death and inflammation
- Understanding Plasmodium falciparum invasion of red blood cells
- Understanding cellular-cross talk within a tumour microenvironment
- Understanding the genetics of neutrophil maturation
- Understanding the roles of E3 ubiquitin ligases in health and disease
- Unveiling the heterogeneity of small cell lung cancer
- Using combination immunotherapy to tackle heterogeneous brain tumours
- Using intravital microscopy for immunotherapy against brain tumours
- Using nanobodies to understand malaria invasion and transmission
- Using structural biology to understand programmed cell death
- Validation and application of serological markers of previous exposure to malaria
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Advancing drug discovery through skill sharing
A long-term collaboration between WEHI and CSL has set the foundation for the development of modern therapeutics. The partnership combines CSL’s experience in drug development with WEHI’s expertise in bioinformatics to provide a deeper understanding of biotherapies and patient populations.
CSL was established in Australia in 1916 to service the health needs of a nation isolated by war. In the years since, it has provided Australians with rapid access to 20th century medical advances including insulin and penicillin, and vaccines against influenza, polio, and other infectious diseases.
Combining skills expertise
CSL’s drug development experience, combined with WEHI’s expertise in bioinformatics, makes a formidable team.
Bioinformatics involves analysing gene sequences and expression using the latest software and technology platforms.
Associate Professor Matthew Ritchie is a leading expert in bioinformatics and is a laboratory head in the Epigenetics and Development division at WEHI. He said the collaboration between WEHI and CSL enabled skill sharing and expertise to advance drug discovery efforts.
“CSL has extensive experience in drug development and has been a terrific partner for WEHI,” Associate Professor Ritchie said.
“Being able to collaborate with a company like CSL helps to shape some of our research endeavours and has led to many co-publications. This demonstrates how effectively we work with each other and benefit from the partnership.”
In turn, Associate Professor Ritchie said WEHI was able to provide access to an experienced team of computational biologists and bioinformaticians, who provided specialist statistical analytical skills to CSL.
“WEHI has Australia’s largest team of computational biology researchers. This is an area of immense skill and expertise for WEHI. Our scientists provide novel data analysis methods to help CSL progress therapeutics to the clinic,” Associate Professor Ritchie said.
“We are also able to assist by providing expertise in single cell analysis, which uses genome-wide profiling via high-throughput sequencing to identify the impact of drugs on particular genes and pathways in different cell types.”
“The partnership allows CSL to tap into the state-of-the-art knowledge and expertise, reducing the time, energy and resources to find the innovative solutions they are after.”
Uncovering potential therapeutic pathways
CSL Head of Global Research Data Science Dr Milica Ng said WEHI had contributed to many of its research projects.
“The ongoing partnership between CSL and WEHI has led to many combined publications and uncovered new actionable insights in therapeutic areas of interest,” she said.
“Ultimately, collaborations like the Bioinformatics Alliance with WEHI help us deliver on our promise to meet the future needs of patients in Australia and around the world.”
“WEHI’s extensive expertise in computational biology has been enormously beneficial and has contributed important innovation to our drug development pipeline.”
Fellowship program helps students gain industry insight
Associate Professor Ritchie said the agreement between WEHI and CSL supported joint PhD projects, where post-graduate students from WEHI could undertake research at CSL that combined cutting edge genomics technologies with advanced data analysis methods.
“These projects accelerate the development of new targeted therapies while providing PhD students with valuable experience working in industry,” he said.
“In addition to this, we have many PhD students who hold joint appointments with CSL where they bring their knowledge in data analysis to the data sets being generated by CSL and the research questions CSL has, which in many ways are similar to our research questions.
“This gives CSL a more targeted approach to their future clinical trials, based on the genomic information they can collate as part of the research programs.”
Fast-tracking therapeutics through collaboration
WEHI’s Head of Biotechnology and Commercialisation, Dr Anne-Laure Puaux, said the alliance with CSL provided opportunities to fast-track the development of therapeutics.
“CSL is brilliant to work with and has extensive experience in drug development,” she said.
“We are thrilled to be partnering with CSL and providing our expertise in bioinformatics to work towards developing new medical treatments.”