Melanie Bahlo-Resources

Melanie Bahlo-Resources

Tools

brain-coX 

brain-coX allows users to interrogate gene co-expressions in the normal human brain using up to seven large microarray datasets adaptively cleaned with respect to your genes of interest. 

RUVcorr 

RUVcorr allows users to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data. 

XIBD 

XIBD performs pairwise identity by descent analysis on the X chromosome and autosomes using SNP genotype data. 

isoRelate 

isoRelate performs pairwise identity by descent analysis on haploid recombining organisms in the presence of multiclonal infections using SNP genotype data 

cavalier 

cavalier (Candidate Variant List Evaluation Report) is an R package designed to assist with filtering and interpreting candidate variants in human whole exome or whole genome sequencing data. Information from a variety of sources is automatically combined and used to generate a presentation ready results, suitable for clinical reporting and discussion. 

 

Media and resources