Zeglinski K, Schuster J, D J, Adair A, Deng J, Pymm P, Ritchie ME, Bowden R, Tham W-H, Gouil Q. Alpseq: an open-source workflow to turbocharge nanobody discovery with high-throughput sequencing. mAbs. 2026;18(1):10.1080/19420862.2026.2623326
van Hal SJ, Jenkins F, Hogan TR, Ray S, Kundu RL, Marshall HS, Bowden R, Lahra MM. Gene exchange between Neisseria meningitidis and Neisseria gonorrhoeae. Microbial Genomics. 2026;12(1):10.1099/mgen.0.001623
M. Bader S, Scherer L, Bhandari R, Motyer AJ, Cooney JP, Mackiewicz L, Dayton M, Sheerin D, V. L. Romero D, Schaefer J, Pang J, Chen S, Schoffer K, Wang L, Jin X, Batey D, Yip RKH, Zaman I, Rajasekhar P, Gartner MJ, Wilcox S, Whitehead L, Georgy SR, Maluenda A, Davidson KC, Allison CC, Bowden R, Brinkmann K, Asselin-Labat M-L, Phipson B, Tanzer MC, Herold MJ, Samson AL, Vince JE, Strasser A, Pellegrini M, Doerflinger M. Non-apoptotic caspase-8 is critical for orchestrating exaggerated inflammation during severe SARS-CoV-2 infection. Nature Communications. 2025;16(1):10.1038/s41467-025-65098-z
Yip RKH, Er J, Qin L, Nguyen QH, Motyer A, Rimes JS, Light A, Mishi RD, Ling L, Anttila CJA, Tsui E, Amann-Zalcenstein D, Dowling MR, Rogers KL, Bowden R, Chen Y, Harrison SJ, Hawkins ED. Profiling the spatial architecture of multiple myeloma in human bone marrow trephine biopsy specimens with spatial transcriptomics∗†. Blood. 2025;146(15):10.1182/blood.2025028896
Cagigas ML, Masedunskas A, Lin Y, Emery‐Corbin SJ, Yousef JM, Dagley LF, Olechnowicz S, Bowden R, Hayward R, Low G, Muirhead R, Brand‐Miller J, Fogeltholm M, Raben A, Demaria M, Fuller SJ, Fontana L. Short‐Term Severe Energy Restriction Promotes Molecular Health and Reverses Aging Signatures in Adults With Prediabetes in the PREVIEW Study. Aging Cell. 2025;24(8):10.1111/acel.70123
O’Keeffe P, Nouri Y, Saw HS, Moore Z, Baldwin TM, Olechnowicz SWZ, Jabbari JS, Squire DM, Leslie S, Wang C, You Y, Ritchie ME, Cross RS, Jenkins MR, Audiger C, Naik SH, Whittle JR, Freytag S, Best SA, Hickey PF, Amann-Zalcenstein D, Bowden R, Brown DV. TIRE-seq simplifies transcriptomics via integrated RNA capture and library preparation. Scientific Reports. 2025;15(1):10.1038/s41598-025-98282-8
Du MRM, Wang C, Law CW, Amann-Zalcenstein D, Anttila CJA, Ling L, Hickey PF, Sargeant CJ, Chen Y, Ioannidis LJ, Rajasekhar P, Yip RKH, Rogers KL, Hansen DS, Bowden R, Ritchie ME. Benchmarking spatial transcriptomics technologies with the multi-sample SpatialBenchVisium dataset. Genome Biology. 2025;26(1):10.1186/s13059-025-03543-4
Yip RKH, Hawkins ED, Bowden R, Rogers KL. Towards deciphering the bone marrow microenvironment with spatial multi-omics. Seminars in Cell and Developmental Biology. 2025;167:10.1016/j.semcdb.2025.01.001
Brown DV, Swierczak A, You Y, You Y, Amann-Zalcenstein D, Hickey P, Hsu A, Ritchie ME, Alhamdoosh M, Field J, Bowden R. A dataset examining technical factors on fixed white blood cell single-cell RNA-seq. Data in Brief. 2024;57:10.1016/j.dib.2024.111096
Zeglinski K, Montellese C, Ritchie ME, Alhamdoosh M, Vonarburg C, Bowden R, Jordi M, Gouil Q, Aeschimann F, Hsu A. An optimized protocol for quality control of gene therapy vectors using nanopore direct RNA sequencing. Genome Research. 2024;34(11):10.1101/gr.279405.124