1. Herring CA, Simmons RK, FREYTAG S, Poppe D, Moffet JJ, Pflueger J, … , Lister R. (2022). Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution. Cell, 185(23), 4428-4447.
2. FREYTAG S, Lister R. schex avoids overplotting for large single-cell RNA-sequencing datasets. Bioinformatics. 2019. PMID: 31794001
3. Tian L, Dong X, FREYTAG S, Lê Cao K-A,Su S, JalalAbadi A, Amann-Zalcenstein D, Weber T S, Seidi A, Jabbari J S, Naik S H, Ritchie Matthew E. scRNA-seq mixology: towards better benchmarking of single cell RNA-seq analysis methods. Nature Methods. 2019. 16(6):479-487. PMID: 31133762
4. FREYTAG S, Tian L, Lönnstedt I, Ng M, Bahlo M. Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data. F1000Research. 2018. PMID: 30228881
5. FREYTAG S, Burgess R, Oliver KL, Bahlo M. brain-coX: investigating and visualising gene co-expression in seven human brain transcriptomic datasets. Genome Medicine. 2017. 9(1):55. PMID: 28595657